PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.PJ07U
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 355aa    MW: 40210 Da    PI: 6.718
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.PJ07UgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEd ++v  v ++G+ +W++++++ g++R++k+c+ rw +yl
      Aradu.PJ07U 14 RGVWSPEEDAKIVAFVSKHGPSNWTSVPKKAGLKRCGKSCRFRWTNYL 61
                     899*******************************************97 PP

2Myb_DNA-binding414.5e-1369110346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +T +E++l++++++  G++ W  Ia+ ++ gRt++++k++w++
      Aradu.PJ07U  69 TFTSQEEDLIIKLHAAIGSR-WFIIAQQLP-GRTDNDVKNYWNT 110
                      79******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.26965IPR017930Myb domain
SuperFamilySSF466891.83E-2811108IPR009057Homeodomain-like
SMARTSM007173.7E-141363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-211668IPR009057Homeodomain-like
CDDcd001671.36E-101761No hitNo description
PROSITE profilePS5129415.91866116IPR017930Myb domain
SMARTSM007172.0E-1266114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2269116IPR009057Homeodomain-like
CDDcd001671.48E-869112No hitNo description
PfamPF002497.3E-1269110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MVRSQGYDKI SVKRGVWSPE EDAKIVAFVS KHGPSNWTSV PKKAGLKRCG KSCRFRWTNY  60
LRPDLKQDTF TSQEEDLIIK LHAAIGSRWF IIAQQLPGRT DNDVKNYWNT KLKKKLSQMG  120
IDPVTHKPFS KLIADYGNIE GSHSQKPTNQ TSFINNKDLK RSSILLNSEP YQTLKPQGVI  180
SRITNNNNSQ QQTLQMEPIT DKTNLSFNSL TDLTMMPTVI GSTDCGIMTE NETITSSSSS  240
SCSTPDQDAS PVASHFRWND FLLEDAFVPT ADNNDQEMVK AGFLSKELLV CRIENVSRQS  300
WNNKEARSQH EAISNDFQLS SSSSSYETSF VEAMLDQENE MFLNFPHLME EPSHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-271411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015967227.10.0PREDICTED: transcription factor MYB35-like
TrEMBLA0A0B2QGM51e-113A0A0B2QGM5_GLYSO; Myb-related protein Zm38
TrEMBLA0A0L9UCS81e-113A0A0L9UCS8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RG071e-113A0A0S3RG07_PHAAN; Uncharacterized protein
STRINGGLYMA06G20020.21e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29423474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-64MYB family protein